GEO - Gene Expression Omnibus | Tool name | GEO - Gene Expression Omnibus |
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| URL | http://www.ncbi.nlm.nih.gov/geo |
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| Important features | A public genomics data repository that supports MIAME-compliant data submissions. Sequence- and array-based data are accepted. It archives and freely distributes microarray, next-generation sequencing, and other forms of high-throughput data. It provides various web-interfaces and applications to query and download the data in GEO. |
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| Citations | Edgar R, Domrachev M, Lash AE. Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 2002 Jan 1;30 (1):207-10. PubMed PMID: 11752295; PubMed Central PMCID: PMC99122. |
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| Year of publication | 2002 |
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| Rank by usage frequency | 1 |
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| Comments | |
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| Function | Microarray, SAGE, Other technique(s), Multiple techniques, Human, Mouse, Rat, Plant, Other species, Multiple species, Raw data repository |
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| Category | Online, Free |
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| Working status | Functional |
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| Other features | |
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| Other citations | 1. Barrett T, Suzek TO, Troup DB, Wilhite SE, Ngau WC, Ledoux P, Rudnev D, Lash AE, Fujibuchi W, Edgar R. NCBI GEO: mining millions of expression profiles--database and tools. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D562-6. PubMed PMID: 15608262; PubMed Central PMCID: PMC539976. 2. Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Edgar R. NCBI GEO: mining tens of millions of expression profiles--database and tools update. Nucleic Acids Res. 2007 Jan;35(Database issue):D760-5. Epub 2006 Nov 11. PubMed PMID: 17099226; PubMed Central PMCID: PMC1669752. 3. Barrett T, Troup DB, Wilhite SE, Ledoux P, Rudnev D, Evangelista C, Kim IF, Soboleva A, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Muertter RN, Edgar R. NCBI GEO: archive for high-throughput functional genomic data. Nucleic Acids Res. 2009 Jan;37(Database issue):D885-90. Epub 2008 Oct 21. PubMed PMID: 18940857; PubMed Central PMCID: PMC2686538. 4. Barrett T, Troup DB, Wilhite SE, Ledoux P, Evangelista C, Kim IF, Tomashevsky M, Marshall KA, Phillippy KH, Sherman PM, Muertter RN, Holko M, Ayanbule O, Yefanov A, Soboleva A. NCBI GEO: archive for functional genomics data sets--10 years on. Nucleic Acids Res. 2011 Jan;39(Database issue):D1005-10. Epub 2010 Nov 21. PubMed PMID: 21097893; PubMed Central PMCID: PMC3013736. |
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